(EN) 1: Gu S, Lo FM, Tsui KWS, Mullapudi N. Data-driven analysis of carrier
frequencies of autosomal recessive and X-linked diseases in the Asian
population: abridged secondary publication. Hong Kong Med J. 2025 Feb;31 Suppl
1(1):14-18. PMID: 40038081.
2: Zhu W, Wang C, Mullapudi N, Cao Y, Li L, Lo IFM, Tsui SK, Chen X, Lei Y, Gu
S. A robust pipeline for ranking carrier frequencies of autosomal recessive and
X-linked Mendelian disorders. NPJ Genom Med. 2022 Dec 19;7(1):72. doi:
10.1038/s41525-022-00344-7. PMID: 36535936; PMCID: PMC9763236.
3: Zhou X, Chen Y, Mok KY, Kwok TCY, Mok VCT, Guo Q, Ip FC, Chen Y, Mullapudi N;
Alzheimer’s Disease Neuroimaging Initiative; Giusti-Rodríguez P, Sullivan PF,
Hardy J, Fu AKY, Li Y, Ip NY. Non-coding variability at the APOE locus
contributes to the Alzheimer’s risk. Nat Commun. 2019 Jul 25;10(1):3310. doi:
10.1038/s41467-019-10945-z. PMID: 31346172; PMCID: PMC6658518.
4: Panigrahi I, Didel S, Kirpal H, Bellampalli R, Miyanath S, Mullapudi N, Rao
S. Novel mutation in a family with WNT1-related osteoporosis. Eur J Med Genet.
2018 Jul;61(7):369-371. doi: 10.1016/j.ejmg.2018.01.017. Epub 2018 Feb 23. PMID:
29481978.
5: Shetty M, Ramdas N, Sahni S, Mullapudi N, Hegde S. A Homozygous Missense
Variant in INPP5E Associated with Joubert Syndrome and Related Disorders.
Mol Syndromol. 2017 Nov;8(6):313-317. doi: 10.1159/000479673. Epub 2017 Sep 8.
PMID: 29230161; PMCID: PMC5701266.
6: Mullapudi N, Ye B, Suzuki M, Fazzari M, Han W, Shi MK, Marquardt G, Lin J,
Wang T, Keller S, Zhu C, Locker JD, Spivack SD. Genome Wide Methylome
Alterations in Lung Cancer. PLoS One. 2015 Dec 18;10(12):e0143826. doi:
10.1371/journal.pone.0143826. PMID: 26683690; PMCID: PMC4684329.
7: Chendamarai E, Ganesan S, Alex AA, Kamath V, Nair SC, Nellickal AJ, Janet NB,
Srivastava V, Lakshmi KM, Viswabandya A, Abraham A, Aiyaz M, Mullapudi N,
Mugasimangalam R, Padua RA, Chomienne C, Chandy M, Srivastava A, George B,
Balasubramanian P, Mathews V. Comparison of newly diagnosed and relapsed
patients with acute promyelocytic leukemia treated with arsenic trioxide:
insight into mechanisms of resistance. PLoS One. 2015 Mar 30;10(3):e0121912.
doi: 10.1371/journal.pone.0121912. PMID: 25822503; PMCID: PMC4378855.
8: Lin J, Marquardt G, Mullapudi N, Wang T, Han W, Shi M, Keller S, Zhu C,
Locker J, Spivack SD. Lung cancer transcriptomes refined with laser capture
microdissection. Am J Pathol. 2014 Nov;184(11):2868-84. doi:
10.1016/j.ajpath.2014.06.028. Epub 2014 Aug 14. PMID: 25128906; PMCID:
PMC4215031.
9: Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G,
Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW,
Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-
Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD,
Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K,
Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q,
Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad
JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS. Analysis of the
genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex
RNA expression and microevolution leading to virulence attenuation. PLoS Genet.
2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. PMID: 24743168;
PMCID: PMC3990503.
10: Biswal DK, Ghatani S, Shylla JA, Sahu R, Mullapudi N, Bhattacharya A, Tandon
V. An integrated pipeline for next generation sequencing and annotation of the
complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski
(Lankester, 1857) Looss, 1899. PeerJ. 2013 Nov 12;1:e207. doi:
10.7717/peerj.207. PMID: 24255820; PMCID: PMC3828612.
11: Annadurai RS, Jayakumar V, Mugasimangalam RC, Katta MA, Anand S, Gopinathan
S, Sarma SP, Fernandes SJ, Mullapudi N, Murugesan S, Rao SN. Next generation
sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-
model plant with potent anti-diabetic properties. BMC Genomics. 2012 Nov
23;13:663. doi: 10.1186/1471-2164-13-663. PMID: 23176672; PMCID: PMC3533581.
12: Serup P, Gustavsen C, Klein T, Potter LA, Lin R, Mullapudi N, Wandzioch E,
Hines A, Davis A, Bruun C, Engberg N, Petersen DR, Peterslund JM, Macdonald RJ,
Grapin-Botton A, Magnuson MA, Zaret KS. Partial promoter substitutions
generating transcriptional sentinels of diverse signaling pathways in embryonic
stem cells and mice. Dis Model Mech. 2012 Nov;5(6):956-66. doi:
10.1242/dmm.009696. Epub 2012 Aug 10. PMID: 22888097; PMCID: PMC3484877.
13: Sundar IK, Mullapudi N, Yao H, Spivack SD, Rahman I. Lung cancer and its
association with chronic obstructive pulmonary disease: update on nexus of
epigenetics. Curr Opin Pulm Med. 2011 Jul;17(4):279-85. doi:
10.1097/MCP.0b013e3283477533. PMID: 21537190; PMCID: PMC3730439.
14: Mullapudi N, Joseph SJ, Kissinger JC. Identification and functional
characterization of cis-regulatory elements in the apicomplexan parasite
Toxoplasma gondii. Genome Biol. 2009;10(4):R34. doi: 10.1186/gb-2009-10-4-r34.
Epub 2009 Apr 7. PMID: 19351398; PMCID: PMC2688925.
15: Mullapudi N, Lancto CA, Abrahamsen MS, Kissinger JC. Identification of
putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern
finding. BMC Genomics. 2007 Jan 9;8:13. doi: 10.1186/1471-2164-8-13. PMID:
17212834; PMCID: PMC1779779.
16: Bhatti MM, Livingston M, Mullapudi N, Sullivan WJ Jr. Pair of unusual GCN5
histone acetyltransferases and ADA2 homologues in the protozoan parasite
Toxoplasma gondii. Eukaryot Cell. 2006 Jan;5(1):62-76. doi:
10.1128/EC.5.1.62-76.2006. PMID: 16400169; PMCID: PMC1360262.
17: Huang J, Mullapudi N, Lancto CA, Scott M, Abrahamsen MS, Kissinger JC.
Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal
gene transfer in Cryptosporidium parvum. Genome Biol. 2004;5(11):R88. doi:
10.1186/gb-2004-5-11-r88. Epub 2004 Oct 19. PMID: 15535864; PMCID: PMC545779.
18: Huang J, Mullapudi N, Sicheritz-Ponten T, Kissinger JC. A first glimpse into
the pattern and scale of gene transfer in Apicomplexa. Int J Parasitol. 2004 Mar
9;34(3):265-74. doi: 10.1016/j.ijpara.2003.11.025. PMID: 15003488.
